mdvtools.cli

Functions

zip_and_remove(folder)	Zip a directory and delete the original.
cli()	MDV Tools CLI
convert_scanpy(folder, scanpy_object, max_dims, ...)	Convert Scanpy AnnData object to MDV format.
convert_mudata(folder, mudata_object, max_dims, ...)	Convert MuData object to MDV format.
convert_vcf(folder, vcf_filename, zip_output)	Convert VCF file to MDV format.
serve(folder)	Serve MDV project.

Module Contents

mdvtools.cli.zip_and_remove(folder)

Zip a directory and delete the original.

mdvtools.cli.cli()

MDV Tools CLI

mdvtools.cli.convert_scanpy(folder, scanpy_object, max_dims, delete_existing, label, chunk_data, add_layer_data, gene_identifier_column, zip_output, chatmdv)

Convert Scanpy AnnData object to MDV format.

mdvtools.cli.convert_mudata(folder, mudata_object, max_dims, delete_existing, chunk_data, zip_output)

Convert MuData object to MDV format.

mdvtools.cli.convert_vcf(folder, vcf_filename, zip_output)

Convert VCF file to MDV format.

mdvtools.cli.serve(folder)

Serve MDV project.